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read counting
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reset
1
vote
12
replies
3.9k
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Problem with summarizeOverlaps function
genomicalignments
read counting
8.7 years ago
kgorczak
▴ 10
4
votes
3
replies
2.9k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps
rnaseq
bplapply
rangedsummarizedexperiment
read counting
7.9 years ago
ErickF
▴ 40
1
vote
4
replies
2.0k
views
Gviz sashimi read count
Gviz
sashimi
sashimi plots
read counting
bam
updated 7.2 years ago by
Robert Ivanek
▴ 730 • written 7.2 years ago by
bernt.popp
• 0
1
vote
4
replies
2.0k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 6.5 years ago by
Gord Brown
▴ 650 • written 6.5 years ago by
tgjohnst
• 0
0
votes
1
reply
1.1k
views
featureCounts : limits on multioverlap (option -O)
featurecounts
read counting
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
marc.gabriel.01
• 0
3
votes
2
replies
969
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting
CNV
rsamtools
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
Bogdan
▴ 670
6 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Comment: deseq2 results
by
sajadahmad41454
• 0
could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…
Answer: normalization using Deseq2
by
ATpoint
★ 4.1k
counts(dds, normalized=TRUE)
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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